PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_BB6B8AC48.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 508aa    MW: 59285 Da    PI: 8.2432
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_BB6B8AC48.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.35.9e-2417105290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                            f+  Y+ ++GF+vr+++++ksk +g it++++vCs+eg+r+ +k++ ++++r+raetrtgCk ++ ++ ++ +g++ev++l++eHnH 
  Traes_2AS_BB6B8AC48.2  17 FWTCYGGHIGFDVRVNYENKSKLDGAITSARYVCSNEGYRRIDKRD-HNTKRPRAETRTGCKVRMGITIDReTGNYEVHELVTEHNHV 103
                            999****************************************999.99*******************9999***************9 PP

                   FAR1  89 la 90 
                            l+
  Traes_2AS_BB6B8AC48.2 104 LQ 105
                            85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1917104IPR004330FAR1 DNA binding domain
PfamPF105511.5E-23227321IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MPQIGMKFNS TKEAWGFWTC YGGHIGFDVR VNYENKSKLD GAITSARYVC SNEGYRRIDK  60
RDHNTKRPRA ETRTGCKVRM GITIDRETGN YEVHELVTEH NHVLQLPGTC HLMPSQRKIS  120
TLQAFDIETA DDSGIVPKAA HELASRQVGG SSSLTYTPRD HKNYLRTKRQ RELIYGEAGS  180
MLKYFRDKKN ENPAFEYDVQ HDCNEQIANI FWADAKMIID YAHFGDVVTF DTTFGTNKEY  240
RPFGVFVGFN HFREMVIFGA ALLYDETFES FRWLFNTFLS IHNKKQPRTI FTNQDVAMGN  300
AIRAVFTEAW HGLCTFHRMQ NAIKHLPHKK KDEDGPNVLA DFSACMYKYE EEEDFEEAFT  360
AIRINVDTQT WLDSIYKVKE KWARCYMRNA YTIGMRSTQL SESLNSDLKD HLKSDLDILC  420
FFKNVERVVK GKRDKEVNEE YESRKKLPRV RIRTPTVIQA SKVYTPHIFE DFQNEYERSI  480
FRMNMKDPSQ RTSSHRGTQC IYCCNCQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613123.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLW5B4A00.0W5B4A0_WHEAT; Uncharacterized protein
STRINGLOC_Os12g03660.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-84FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]